J3_8PPL_016
3D structure
- PDB id
- 8PPL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- MERS-CoV Nsp1 bound to the human 43S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- CCG*(PSU)UCCG*CAAAG
- Length
- 13 nucleotides
- Bulged bases
- 8PPL|1|A2|C|1138, 8PPL|1|A2|A|1150
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8PPL|1|A2|C|1094
8PPL|1|A2|C|1095
8PPL|1|A2|G|1096
*
8PPL|1|A2|PSU|1136
8PPL|1|A2|U|1137
8PPL|1|A2|C|1138
8PPL|1|A2|C|1139
8PPL|1|A2|G|1140
*
8PPL|1|A2|C|1147
8PPL|1|A2|A|1148
8PPL|1|A2|A|1149
8PPL|1|A2|A|1150
8PPL|1|A2|G|1151
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AA
- 40S ribosomal protein SA
- Chain AC
- 40S ribosomal protein S2
- Chain AV
- 40S ribosomal protein S21
- Chain AW
- 40S ribosomal protein S15a
- Chain Aa
- 40S ribosomal protein S26
- Chain Ab
- 40S ribosomal protein S27
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