J3_8PPL_021

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CAGAUCAAAACCAACC*GCGGCUUUG*C(PSU)AG

Length

29 nucleotides

Bulged bases

8PPL|1|A2|C|228

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PPL|1|A2|C|223
8PPL|1|A2|A|224
8PPL|1|A2|G|225
8PPL|1|A2|A|226
8PPL|1|A2|U|227
8PPL|1|A2|C|228
8PPL|1|A2|A|229
8PPL|1|A2|A|230
8PPL|1|A2|A|231
8PPL|1|A2|A|232
8PPL|1|A2|C|233
8PPL|1|A2|C|234
8PPL|1|A2|A|235
8PPL|1|A2|A|236
8PPL|1|A2|C|237
8PPL|1|A2|C|238
*
8PPL|1|A2|G|280
8PPL|1|A2|C|281
8PPL|1|A2|G|282
8PPL|1|A2|G|283
8PPL|1|A2|C|284
8PPL|1|A2|U|285
8PPL|1|A2|U|286
8PPL|1|A2|U|287
8PPL|1|A2|G|288
*
8PPL|1|A2|C|295
8PPL|1|A2|PSU|296
8PPL|1|A2|A|297
8PPL|1|A2|G|298

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AE

40S ribosomal protein S4, X isoform

Chain AG

40S ribosomal protein S6

Chain AI

40S ribosomal protein S8

Chain AL

40S ribosomal protein S11