J3_8PV1_016
3D structure
- PDB id
- 8PV1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 6 - pre-5S rotation - L1 intermediate - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.56 Å
Loop
- Sequence
- AUGAAAAGCAC*GG(OMG)UUA(A2M)AUAGCACG*CU
- Length
- 28 nucleotides
- Bulged bases
- 8PV1|1|C1|U|391, 8PV1|1|C1|A|395
- QA status
- Modified nucleotides: OMG, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8PV1_016 not in the Motif Atlas
- Homologous match to J3_8P9A_047
- Geometric discrepancy: 0.096
- The information below is about J3_8P9A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.2
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 10
Unit IDs
8PV1|1|C1|A|362
8PV1|1|C1|U|363
8PV1|1|C1|G|364
8PV1|1|C1|A|365
8PV1|1|C1|A|366
8PV1|1|C1|A|367
8PV1|1|C1|A|368
8PV1|1|C1|G|369
8PV1|1|C1|C|370
8PV1|1|C1|A|371
8PV1|1|C1|C|372
*
8PV1|1|C1|G|383
8PV1|1|C1|G|384
8PV1|1|C1|OMG|385
8PV1|1|C1|U|386
8PV1|1|C1|U|387
8PV1|1|C1|A|388
8PV1|1|C1|A2M|389
8PV1|1|C1|A|390
8PV1|1|C1|U|391
8PV1|1|C1|A|392
8PV1|1|C1|G|393
8PV1|1|C1|C|394
8PV1|1|C1|A|395
8PV1|1|C1|C|396
8PV1|1|C1|G|397
*
8PV1|1|C2|C|19
8PV1|1|C2|U|20
Current chains
- Chain C1
- 26S rRNA
- Chain C2
- 5.8S rRNA
Nearby chains
- Chain CH
- Nucleolar GTP-binding protein 1
- Chain LC
- 60S ribosomal protein L4-like protein
- Chain LP
- 60S ribosomal protein l17-like protein
- Chain LY
- 60S ribosomal protein L26-like protein
- Chain Ll
- Ribosomal protein eL39
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