J3_8PV2_012
3D structure
- PDB id
- 8PV2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 10 - pre-5S rotation with Ytm1-Erb1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- CAAAUUUGAAAG*CGUUGUAAUUUGGAG*CGACG
- Length
- 32 nucleotides
- Bulged bases
- 8PV2|1|C1|U|118, 8PV2|1|C1|G|121, 8PV2|1|C1|A|122, 8PV2|1|C1|U|143, 8PV2|1|C1|G|152
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8PV2|1|C1|C|114
8PV2|1|C1|A|115
8PV2|1|C1|A|116
8PV2|1|C1|A|117
8PV2|1|C1|U|118
8PV2|1|C1|U|119
8PV2|1|C1|U|120
8PV2|1|C1|G|121
8PV2|1|C1|A|122
8PV2|1|C1|A|123
8PV2|1|C1|A|124
8PV2|1|C1|G|125
*
8PV2|1|C1|C|140
8PV2|1|C1|G|141
8PV2|1|C1|U|142
8PV2|1|C1|U|143
8PV2|1|C1|G|144
8PV2|1|C1|U|145
8PV2|1|C1|A|146
8PV2|1|C1|A|147
8PV2|1|C1|U|148
8PV2|1|C1|U|149
8PV2|1|C1|U|150
8PV2|1|C1|G|151
8PV2|1|C1|G|152
8PV2|1|C1|A|153
8PV2|1|C1|G|154
*
8PV2|1|C1|C|256
8PV2|1|C1|G|257
8PV2|1|C1|A|258
8PV2|1|C1|C|259
8PV2|1|C1|G|260
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain C2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain CC
- Ribosome biogenesis protein ERB1
- Chain CJ
- Pescadillo homolog
- Chain LG
- 60S ribosomal protein L8
- Chain LL
- 60S ribosomal protein L13
- Chain LN
- Ribosomal protein L15
- Chain Lh
- dolichyl-diphosphooligosaccharide--protein glycotransferase
- Chain Li
- 60S ribosomal protein L36
Coloring options: