J3_8PV5_021

3D structure

PDB id

8PV5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 8 - pre-5S rotation without Foot - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CG*CAACUGAAC*GGGAGG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PV5|1|C1|C|1611
8PV5|1|C1|G|1612
*
8PV5|1|C1|C|1621
8PV5|1|C1|A|1622
8PV5|1|C1|A|1623
8PV5|1|C1|C|1624
8PV5|1|C1|U|1625
8PV5|1|C1|G|1626
8PV5|1|C1|A|1627
8PV5|1|C1|A|1628
8PV5|1|C1|C|1629
*
8PV5|1|C1|G|1786
8PV5|1|C1|G|1787
8PV5|1|C1|G|1788
8PV5|1|C1|A|1789
8PV5|1|C1|G|1790
8PV5|1|C1|G|1791

Current chains

Chain C1

26S rRNA

Nearby chains

Chain LA

60S ribosomal protein L2-like protein

Chain LZ

60S ribosomal protein L27

Chain Lg

Ribosomal protein l34-like protein