J3_8PVA_002
3D structure
- PDB id
- 8PVA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of bacterial ribosome determined by cryoEM at 100 keV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- CAAG*CUAGUAA*UGAAUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8PVA_002 not in the Motif Atlas
- Homologous match to J3_4LFB_002
- Geometric discrepancy: 0.0742
- The information below is about J3_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85722.1
- Basepair signature
- cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW
- Number of instances in this motif group
- 5
Unit IDs
8PVA|1|A|C|936
8PVA|1|A|A|937
8PVA|1|A|A|938
8PVA|1|A|G|939
*
8PVA|1|A|C|1344
8PVA|1|A|U|1345
8PVA|1|A|A|1346
8PVA|1|A|G|1347
8PVA|1|A|U|1348
8PVA|1|A|A|1349
8PVA|1|A|A|1350
*
8PVA|1|A|U|1372
8PVA|1|A|G|1373
8PVA|1|A|A|1374
8PVA|1|A|A|1375
8PVA|1|A|U|1376
8PVA|1|A|A|1377
8PVA|1|A|C|1378
8PVA|1|A|G|1379
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain G
- Small ribosomal subunit protein uS7
- Chain I
- Small ribosomal subunit protein uS9
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