J3_8PVA_005

3D structure

PDB id

8PVA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial ribosome determined by cryoEM at 100 keV

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8PVA_005 not in the Motif Atlas

Geometric match to J3_5J7L_007

Geometric discrepancy: 0.1142

The information below is about J3_5J7L_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82572.1

Basepair signature

cWW-tSH-tWW-F-cWW-tHW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

8PVA|1|A|C|990
8PVA|1|A|U|991
8PVA|1|A|U|992
8PVA|1|A|G|993
*
8PVA|1|A|C|1045
8PVA|1|A|A|1046
8PVA|1|A|G|1047
*
8PVA|1|A|C|1210
8PVA|1|A|U|1211
8PVA|1|A|U|1212
8PVA|1|A|A|1213
8PVA|1|A|C|1214
8PVA|1|A|G|1215

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

Small ribosomal subunit protein uS14