J3_8PVA_011

3D structure

PDB id

8PVA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial ribosome determined by cryoEM at 100 keV

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8PVA_011 not in the Motif Atlas

Homologous match to J3_8VTW_004

Geometric discrepancy: 0.2007

The information below is about J3_8VTW_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.5

Basepair signature

cWW-cWW-cWW-cWW-tSH-F-F-F

Number of instances in this motif group

5

Unit IDs

8PVA|1|a|C|1298
8PVA|1|a|G|1299
8PVA|1|a|G|1300
8PVA|1|a|A|1301
8PVA|1|a|A|1302
8PVA|1|a|G|1303
*
8PVA|1|a|C|1625
8PVA|1|a|A|1626
8PVA|1|a|G|1627
*
8PVA|1|a|C|1639
8PVA|1|a|A|1640
8PVA|1|a|A|1641
8PVA|1|a|G|1642

Current chains

Chain a

23S rRNA

Nearby chains