J3_8PVA_020
3D structure
- PDB id
- 8PVA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of bacterial ribosome determined by cryoEM at 100 keV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- CGG*CUUG*CG
- Length
- 9 nucleotides
- Bulged bases
- 8PVA|1|A|U|653
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8PVA_020 not in the Motif Atlas
- Geometric match to J3_4LFB_011
- Geometric discrepancy: 0.075
- The information below is about J3_4LFB_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_56052.5
- Basepair signature
- cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
8PVA|1|A|C|586
8PVA|1|A|G|587
8PVA|1|A|G|588
*
8PVA|1|A|C|651
8PVA|1|A|U|652
8PVA|1|A|U|653
8PVA|1|A|G|654
*
8PVA|1|A|C|754
8PVA|1|A|G|755
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain H
- Small ribosomal subunit protein uS8
- Chain L
- Small ribosomal subunit protein uS12
- Chain O
- Small ribosomal subunit protein uS15
- Chain Q
- Small ribosomal subunit protein uS17
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