J3_8PVK_020
3D structure
- PDB id
- 8PVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.55 Å
Loop
- Sequence
- CAUAG*CGUUUCAAAG*CGUGUG
- Length
- 21 nucleotides
- Bulged bases
- 8PVK|1|C1|C|1539, 8PVK|1|C1|A|1541, 8PVK|1|C1|U|1560
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8PVK|1|C1|C|1521
8PVK|1|C1|A|1522
8PVK|1|C1|U|1523
8PVK|1|C1|A|1524
8PVK|1|C1|G|1525
*
8PVK|1|C1|C|1534
8PVK|1|C1|G|1535
8PVK|1|C1|U|1536
8PVK|1|C1|U|1537
8PVK|1|C1|U|1538
8PVK|1|C1|C|1539
8PVK|1|C1|A|1540
8PVK|1|C1|A|1541
8PVK|1|C1|A|1542
8PVK|1|C1|G|1543
*
8PVK|1|C1|C|1558
8PVK|1|C1|G|1559
8PVK|1|C1|U|1560
8PVK|1|C1|G|1561
8PVK|1|C1|U|1562
8PVK|1|C1|G|1563
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain C2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain CJ
- Pescadillo homolog
- Chain LA
- 60S ribosomal protein L2-like protein
- Chain LG
- 60S ribosomal protein L8
- Chain LN
- Ribosomal protein L15
- Chain LX
- 60S ribosomal protein L25-like protein
- Chain Lj
- Ribosomal protein L37
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