J3_8PVK_023
3D structure
- PDB id
- 8PVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.55 Å
Loop
- Sequence
- UAGACG*CCUAGCAGG*CGUAUUGCAAUUUAGA
- Length
- 31 nucleotides
- Bulged bases
- 8PVK|1|C1|A|3126, 8PVK|1|C1|G|3127, 8PVK|1|C1|A|3160, 8PVK|1|C1|G|3161, 8PVK|1|C1|C|3162, 8PVK|1|C1|G|3164, 8PVK|1|C1|A|3209, 8PVK|1|C1|U|3211, 8PVK|1|C1|C|3213, 8PVK|1|C1|U|3217
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8PVK|1|C1|U|3125
8PVK|1|C1|A|3126
8PVK|1|C1|G|3127
8PVK|1|C1|A|3128
8PVK|1|C1|C|3129
8PVK|1|C1|G|3130
*
8PVK|1|C1|C|3157
8PVK|1|C1|C|3158
8PVK|1|C1|U|3159
8PVK|1|C1|A|3160
8PVK|1|C1|G|3161
8PVK|1|C1|C|3162
8PVK|1|C1|A|3163
8PVK|1|C1|G|3164
8PVK|1|C1|G|3165
*
8PVK|1|C1|C|3206
8PVK|1|C1|G|3207
8PVK|1|C1|U|3208
8PVK|1|C1|A|3209
8PVK|1|C1|U|3210
8PVK|1|C1|U|3211
8PVK|1|C1|G|3212
8PVK|1|C1|C|3213
8PVK|1|C1|A|3214
8PVK|1|C1|A|3215
8PVK|1|C1|U|3216
8PVK|1|C1|U|3217
8PVK|1|C1|U|3218
8PVK|1|C1|A|3219
8PVK|1|C1|G|3220
8PVK|1|C1|A|3221
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain CO
- DUF2423 domain-containing protein
- Chain LE
- 60S ribosomal protein L6
- Chain LM
- 60S ribosomal protein L14-like protein
- Chain LO
- 60S ribosomal protein L16-like protein
- Chain LP
- 60S ribosomal protein l17-like protein
- Chain Lf
- 60S ribosomal protein l33-like protein
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