J3_8PVL_012

3D structure

PDB id

8PVL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 7 - pre-5S rotation lacking Utp30/ITS2 - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

CAAAUUUGAAAG*CGUUGUAAUUUGGAG*CGACG

Length

32 nucleotides

Bulged bases

8PVL|1|C1|U|118, 8PVL|1|C1|G|121, 8PVL|1|C1|A|122, 8PVL|1|C1|U|143, 8PVL|1|C1|G|152

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PVL|1|C1|C|114
8PVL|1|C1|A|115
8PVL|1|C1|A|116
8PVL|1|C1|A|117
8PVL|1|C1|U|118
8PVL|1|C1|U|119
8PVL|1|C1|U|120
8PVL|1|C1|G|121
8PVL|1|C1|A|122
8PVL|1|C1|A|123
8PVL|1|C1|A|124
8PVL|1|C1|G|125
*
8PVL|1|C1|C|140
8PVL|1|C1|G|141
8PVL|1|C1|U|142
8PVL|1|C1|U|143
8PVL|1|C1|G|144
8PVL|1|C1|U|145
8PVL|1|C1|A|146
8PVL|1|C1|A|147
8PVL|1|C1|U|148
8PVL|1|C1|U|149
8PVL|1|C1|U|150
8PVL|1|C1|G|151
8PVL|1|C1|G|152
8PVL|1|C1|A|153
8PVL|1|C1|G|154
*
8PVL|1|C1|C|256
8PVL|1|C1|G|257
8PVL|1|C1|A|258
8PVL|1|C1|C|259
8PVL|1|C1|G|260

Current chains

Chain C1

26S rRNA

Nearby chains

Chain C2

5.8S ribosomal RNA; 5.8S rRNA

Chain CJ

Pescadillo homolog

Chain LG

60S ribosomal protein L8

Chain LL

60S ribosomal protein L13

Chain LN

Ribosomal protein L15

Chain Lh

dolichyl-diphosphooligosaccharide--protein glycotransferase

Chain Li

60S ribosomal protein L36