J3_8PVL_013

3D structure

PDB id

8PVL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 7 - pre-5S rotation lacking Utp30/ITS2 - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

UGAG*CGCCACAGAG*CGUAUA

Length

20 nucleotides

Bulged bases

8PVL|1|C1|C|204

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PVL|1|C1|U|180
8PVL|1|C1|G|181
8PVL|1|C1|A|182
8PVL|1|C1|G|183
*
8PVL|1|C1|C|199
8PVL|1|C1|G|200
8PVL|1|C1|C|201
8PVL|1|C1|C|202
8PVL|1|C1|A|203
8PVL|1|C1|C|204
8PVL|1|C1|A|205
8PVL|1|C1|G|206
8PVL|1|C1|A|207
8PVL|1|C1|G|208
*
8PVL|1|C1|C|220
8PVL|1|C1|G|221
8PVL|1|C1|U|222
8PVL|1|C1|A|223
8PVL|1|C1|U|224
8PVL|1|C1|A|225

Current chains

Chain C1

26S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4-like protein

Chain LY

60S ribosomal protein L26-like protein