J3_8PVL_024

3D structure

PDB id

8PVL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 7 - pre-5S rotation lacking Utp30/ITS2 - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

CC*GAUG*CUAG

Length

10 nucleotides

Bulged bases

8PVL|1|C1|A|3257

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PVL|1|C1|C|3239
8PVL|1|C1|C|3240
*
8PVL|1|C1|G|3256
8PVL|1|C1|A|3257
8PVL|1|C1|U|3258
8PVL|1|C1|G|3259
*
8PVL|1|C1|C|3330
8PVL|1|C1|U|3331
8PVL|1|C1|A|3332
8PVL|1|C1|G|3333

Current chains

Chain C1

26S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3-like protein

Chain LP

60S ribosomal protein l17-like protein

Chain Ld

Putative 60S ribosomal protein