3D structure

PDB id
8Q4F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of arbekacin bound Escherichia coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UUUAAUUC*GAAGAACCUUAC*GGCA
Length
24 nucleotides
Bulged bases
8Q4F|1|A|A|975, 8Q4F|1|A|G|976, 8Q4F|1|A|A|978
QA status
Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8Q4F|1|A|U|955
8Q4F|1|A|U|956
8Q4F|1|A|U|957
8Q4F|1|A|A|958
8Q4F|1|A|A|959
8Q4F|1|A|U|960
8Q4F|1|A|U|961
8Q4F|1|A|C|962
*
8Q4F|1|A|G|973
8Q4F|1|A|A|974
8Q4F|1|A|A|975
8Q4F|1|A|G|976
8Q4F|1|A|A|977
8Q4F|1|A|A|978
8Q4F|1|A|C|979
8Q4F|1|A|C|980
8Q4F|1|A|U|981
8Q4F|1|A|U|982
8Q4F|1|A|A|983
8Q4F|1|A|C|984
*
8Q4F|1|A|G|1221
8Q4F|1|A|G|1222
8Q4F|1|A|C|1223
8Q4F|1|A|A|1225

Current chains

Chain A
16S rRNA

Nearby chains

Chain J
Small ribosomal subunit protein uS10
Chain M
Small ribosomal subunit protein uS13
Chain N
Small ribosomal subunit protein uS14
Chain S
Small ribosomal subunit protein uS19

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 1.0093 s
Application loaded.