J3_8Q4F_004

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGUCUUG*CAGG*CCUUACGACC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Q4F|1|A|G|987
8Q4F|1|A|G|988
8Q4F|1|A|U|989
8Q4F|1|A|C|990
8Q4F|1|A|U|991
8Q4F|1|A|U|992
8Q4F|1|A|G|993
*
8Q4F|1|A|C|1045
8Q4F|1|A|A|1046
8Q4F|1|A|G|1047
8Q4F|1|A|G|1048
*
8Q4F|1|A|C|1209
8Q4F|1|A|C|1210
8Q4F|1|A|U|1211
8Q4F|1|A|U|1212
8Q4F|1|A|A|1213
8Q4F|1|A|C|1214
8Q4F|1|A|G|1215
8Q4F|1|A|A|1216
8Q4F|1|A|C|1217
8Q4F|1|A|C|1218

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

Small ribosomal subunit protein uS14

Chain S

Small ribosomal subunit protein uS19