3D structure

PDB id
8Q4F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of arbekacin bound Escherichia coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GCCGUAG*CGC*GGAAC
Length
15 nucleotides
Bulged bases
8Q4F|1|b|U|14, 8Q4F|1|b|A|108
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8Q4F_016 not in the Motif Atlas
Homologous match to J3_5J7L_049
Geometric discrepancy: 0.1256
The information below is about J3_5J7L_049
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_89095.1
Basepair signature
cWW-F-F-F-tHS-F-cWW-F-cWW
Number of instances in this motif group
1

Unit IDs

8Q4F|1|b|G|10
8Q4F|1|b|C|11
8Q4F|1|b|C|12
8Q4F|1|b|G|13
8Q4F|1|b|U|14
8Q4F|1|b|A|15
8Q4F|1|b|G|16
*
8Q4F|1|b|C|68
8Q4F|1|b|G|69
8Q4F|1|b|C|70
*
8Q4F|1|b|G|106
8Q4F|1|b|G|107
8Q4F|1|b|A|108
8Q4F|1|b|A|109
8Q4F|1|b|C|110

Current chains

Chain b
5S rRNA

Nearby chains

Chain a
Large subunit ribosomal RNA; LSU rRNA
Chain n
Large ribosomal subunit protein uL18
Chain u
Large ribosomal subunit protein bL25
Chain v
Large ribosomal subunit protein bL27

Coloring options:


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