J3_8Q4F_017

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GC*GGAAUAU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8Q4F_017 not in the Motif Atlas

Geometric match to J3_5J7L_001

Geometric discrepancy: 0.1213

The information below is about J3_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.4

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8Q4F|1|A|G|46
8Q4F|1|A|C|47
*
8Q4F|1|A|G|361
8Q4F|1|A|G|362
8Q4F|1|A|A|363
8Q4F|1|A|A|364
8Q4F|1|A|U|365
8Q4F|1|A|A|366
8Q4F|1|A|U|367
*
8Q4F|1|A|A|393
8Q4F|1|A|G|394
8Q4F|1|A|C|395

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

Small ribosomal subunit protein uS12

Chain P

Small ribosomal subunit protein bS16