3D structure

PDB id
8Q4F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of arbekacin bound Escherichia coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
AC*GAUAAGC*GAUUU
Length
14 nucleotides
Bulged bases
8Q4F|1|a|U|72, 8Q4F|1|a|A|74
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8Q4F_027 not in the Motif Atlas
Homologous match to J3_5J7L_037
Geometric discrepancy: 0.1444
The information below is about J3_5J7L_037
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_35667.2
Basepair signature
cWW-cWW-F-F-F-cWW-F-cWW
Number of instances in this motif group
7

Unit IDs

8Q4F|1|a|A|56
8Q4F|1|a|C|57
*
8Q4F|1|a|G|70
8Q4F|1|a|A|71
8Q4F|1|a|U|72
8Q4F|1|a|A|73
8Q4F|1|a|A|74
8Q4F|1|a|G|75
8Q4F|1|a|C|76
*
8Q4F|1|a|G|110
8Q4F|1|a|A|111
8Q4F|1|a|U|112
8Q4F|1|a|U|113
8Q4F|1|a|U|114

Current chains

Chain a
23S rRNA

Nearby chains

Chain 1
Large ribosomal subunit protein bL34
Chain s
Large ribosomal subunit protein uL23
Chain x
Large ribosomal subunit protein uL29

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