J3_8Q4F_028

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCGACC*GAAA*UA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8Q4F_028 not in the Motif Atlas

Homologous match to J3_5J7L_043

Geometric discrepancy: 0.1415

The information below is about J3_5J7L_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92705.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

1

Unit IDs

8Q4F|1|a|U|1344
8Q4F|1|a|C|1345
8Q4F|1|a|G|1346
8Q4F|1|a|A|1347
8Q4F|1|a|C|1348
8Q4F|1|a|C|1349
*
8Q4F|1|a|G|1382
8Q4F|1|a|A|1383
8Q4F|1|a|A|1384
8Q4F|1|a|A|1385
*
8Q4F|1|a|U|1402
8Q4F|1|a|A|1403

Current chains

Chain a

23S rRNA

Nearby chains

Chain s

Large ribosomal subunit protein uL23