J3_8Q5I_018
3D structure
- PDB id
- 8Q5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with cephaeline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- CUUAAUUU*GGGGAAACUCAC*GGCCG
- Length
- 25 nucleotides
- Bulged bases
- 8Q5I|1|A|G|1184, 8Q5I|1|A|G|1186, 8Q5I|1|A|A|1188
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8Q5I_018 not in the Motif Atlas
- Homologous match to J3_8C3A_040
- Geometric discrepancy: 0.0452
- The information below is about J3_8C3A_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.3
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8Q5I|1|A|C|1165
8Q5I|1|A|U|1166
8Q5I|1|A|U|1167
8Q5I|1|A|A|1168
8Q5I|1|A|A|1169
8Q5I|1|A|U|1170
8Q5I|1|A|U|1171
8Q5I|1|A|U|1172
*
8Q5I|1|A|G|1183
8Q5I|1|A|G|1184
8Q5I|1|A|G|1185
8Q5I|1|A|G|1186
8Q5I|1|A|A|1187
8Q5I|1|A|A|1188
8Q5I|1|A|A|1189
8Q5I|1|A|C|1190
8Q5I|1|A|U|1191
8Q5I|1|A|C|1192
8Q5I|1|A|A|1193
8Q5I|1|A|C|1194
*
8Q5I|1|A|G|1440
8Q5I|1|A|G|1441
8Q5I|1|A|C|1442
8Q5I|1|A|C|1443
8Q5I|1|A|G|1444
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain Q
- 40S ribosomal protein S15
- Chain T
- 40S ribosomal protein S18-B
- Chain V
- Ribosomal protein S10
- Chain e
- 40S ribosomal protein S29A
Coloring options: