J3_8Q5I_025
3D structure
- PDB id
- 8Q5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with cephaeline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAC*GGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 8Q5I|1|1|U|343, 8Q5I|1|1|A|351, 8Q5I|1|4|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8Q5I_025 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0454
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.2
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 11
Unit IDs
8Q5I|1|1|C|340
8Q5I|1|1|G|341
8Q5I|1|1|A|342
8Q5I|1|1|U|343
8Q5I|1|1|A|344
8Q5I|1|1|G|345
8Q5I|1|1|C|346
8Q5I|1|1|G|347
8Q5I|1|1|A|348
8Q5I|1|1|A|349
8Q5I|1|1|C|350
8Q5I|1|1|A|351
8Q5I|1|1|A|352
8Q5I|1|1|G|353
8Q5I|1|1|U|354
8Q5I|1|1|A|355
8Q5I|1|1|C|356
*
8Q5I|1|1|G|363
8Q5I|1|1|G|364
8Q5I|1|1|A|365
8Q5I|1|1|A|366
8Q5I|1|1|A|367
8Q5I|1|1|G|368
*
8Q5I|1|4|C|21
8Q5I|1|4|U|22
8Q5I|1|4|U|23
8Q5I|1|4|G|24
Current chains
- Chain 1
- 25S rRNA
- Chain 4
- 5.8S rRNA
Nearby chains
- Chain 9
- Ribosomal protein L24
- Chain AK
- 60S ribosomal protein L37-B
- Chain AM
- 60S ribosomal protein L39
- Chain l
- 60S ribosomal protein L4-B
Coloring options: