J3_8QBT_001

3D structure

PDB id

8QBT (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli ApdP-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

8QBT|1|A|U|686, 8QBT|1|A|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8QBT_001 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0501

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8QBT|1|A|U|683
8QBT|1|A|G|684
8QBT|1|A|A|685
8QBT|1|A|U|686
8QBT|1|A|C|687
8QBT|1|A|U|688
8QBT|1|A|A|689
*
8QBT|1|A|U|773
8QBT|1|A|G|774
8QBT|1|A|G|775
*
8QBT|1|A|C|791
8QBT|1|A|A|792
8QBT|1|A|A|793
8QBT|1|A|A|794

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2

Chain E

Large ribosomal subunit protein uL4

Chain c

Large ribosomal subunit protein bL34