J3_8QBT_011

3D structure

PDB id

8QBT (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli ApdP-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8QBT_011 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0707

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

8QBT|1|i|C|936
8QBT|1|i|A|937
8QBT|1|i|A|938
8QBT|1|i|G|939
*
8QBT|1|i|C|1344
8QBT|1|i|U|1345
8QBT|1|i|A|1346
8QBT|1|i|G|1347
8QBT|1|i|U|1348
8QBT|1|i|A|1349
8QBT|1|i|A|1350
*
8QBT|1|i|U|1372
8QBT|1|i|G|1373
8QBT|1|i|A|1374
8QBT|1|i|A|1375
8QBT|1|i|U|1376
8QBT|1|i|A|1377
8QBT|1|i|C|1378
8QBT|1|i|G|1379

Current chains

Chain i

16S rRNA

Nearby chains

Chain 7

Transfer RNA; tRNA

Chain o

30S ribosomal protein S7

Chain q

Small ribosomal subunit protein uS9