J3_8QBT_026
3D structure
- PDB id
- 8QBT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli ApdP-stalled ribosomal complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GCA*UCAUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 8QBT|1|A|A|2388, 8QBT|1|A|A|2426
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8QBT_026 not in the Motif Atlas
- Homologous match to J3_5J7L_070
- Geometric discrepancy: 0.0563
- The information below is about J3_5J7L_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8QBT|1|A|G|2282
8QBT|1|A|C|2283
8QBT|1|A|A|2284
*
8QBT|1|A|U|2384
8QBT|1|A|C|2385
8QBT|1|A|A|2386
8QBT|1|A|U|2387
8QBT|1|A|A|2388
8QBT|1|A|G|2389
8QBT|1|A|U|2390
8QBT|1|A|G|2391
8QBT|1|A|A|2392
8QBT|1|A|U|2393
8QBT|1|A|C|2394
8QBT|1|A|C|2395
*
8QBT|1|A|G|2421
8QBT|1|A|C|2422
8QBT|1|A|U|2423
8QBT|1|A|C|2424
8QBT|1|A|A|2425
8QBT|1|A|A|2426
8QBT|1|A|C|2427
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 7
- Transfer RNA; tRNA
- Chain L
- 50S ribosomal protein L15
- Chain W
- Large ribosomal subunit protein bL27
- Chain b
- Large ribosomal subunit protein bL33
- Chain d
- Large ribosomal subunit protein bL35
Coloring options: