J3_8QFD_011

3D structure

PDB id

8QFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

UFL1 E3 ligase bound 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CAU*GCUU*AAGG

Length

11 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QFD|1|5|C|4969
8QFD|1|5|A|4970
8QFD|1|5|U|4971
*
8QFD|1|5|G|4985
8QFD|1|5|C|4986
8QFD|1|5|U|4987
8QFD|1|5|U|4990
*
8QFD|1|5|A|5059
8QFD|1|5|A|5060
8QFD|1|5|G|5061
8QFD|1|5|G|5062

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain P

60S ribosomal protein L17

Chain d

60S ribosomal protein L31