J3_8QOA_015

3D structure

PDB id

8QOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SecM-stalled Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

8QOA|1|a|A|2518, 8QOA|1|a|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8QOA_015 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.0357

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

8QOA|1|a|C|2517
8QOA|1|a|A|2518
8QOA|1|a|U|2519
8QOA|1|a|C|2520
*
8QOA|1|a|G|2545
8QOA|1|a|U|2546
8QOA|1|a|A|2547
*
8QOA|1|a|U|2561
8QOA|1|a|U|2562
8QOA|1|a|U|2563
8QOA|1|a|A|2564
8QOA|1|a|A|2565
8QOA|1|a|A|2566
8QOA|1|a|G|2567

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain i

Large ribosomal subunit protein uL13

Chain j

Large ribosomal subunit protein uL14