J3_8QOA_023

3D structure

PDB id

8QOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SecM-stalled Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

8QOA|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8QOA_023 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1124

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

8QOA|1|A|C|990
8QOA|1|A|U|991
8QOA|1|A|U|992
8QOA|1|A|G|993
8QOA|1|A|A|994
8QOA|1|A|C|995
8QOA|1|A|A|996
8QOA|1|A|U|997
*
8QOA|1|A|A|1044
8QOA|1|A|C|1045
8QOA|1|A|A|1046
8QOA|1|A|G|1047
*
8QOA|1|A|C|1210
8QOA|1|A|U|1211
8QOA|1|A|U|1212
8QOA|1|A|A|1213
8QOA|1|A|C|1214
8QOA|1|A|G|1215

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

Small ribosomal subunit protein uS14