J3_8QOA_031

3D structure

PDB id

8QOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SecM-stalled Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

8QOA|1|a|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8QOA_031 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.034

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8QOA|1|a|G|297
8QOA|1|a|G|298
8QOA|1|a|A|299
8QOA|1|a|A|300
8QOA|1|a|G|301
*
8QOA|1|a|C|316
8QOA|1|a|G|317
8QOA|1|a|C|318
8QOA|1|a|G|319
8QOA|1|a|A|320
8QOA|1|a|U|321
8QOA|1|a|A|322
8QOA|1|a|C|323
8QOA|1|a|A|324
8QOA|1|a|G|325
*
8QOA|1|a|C|337
8QOA|1|a|G|338
8QOA|1|a|U|339
8QOA|1|a|A|340
8QOA|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain t

Large ribosomal subunit protein uL24