J3_8QOA_032

3D structure

PDB id

8QOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SecM-stalled Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

UCGACC*GAAA*UA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8QOA_032 not in the Motif Atlas

Homologous match to J3_5J7L_043

Geometric discrepancy: 0.061

The information below is about J3_5J7L_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92705.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

1

Unit IDs

8QOA|1|a|U|1344
8QOA|1|a|C|1345
8QOA|1|a|G|1346
8QOA|1|a|A|1347
8QOA|1|a|C|1348
8QOA|1|a|C|1349
*
8QOA|1|a|G|1382
8QOA|1|a|A|1383
8QOA|1|a|A|1384
8QOA|1|a|A|1385
*
8QOA|1|a|U|1402
8QOA|1|a|A|1403

Current chains

Chain a

23S rRNA

Nearby chains

Chain s

Large ribosomal subunit protein uL23