J3_8QOI_010

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

CA(PSU)(PSU)CG*CCUGCUUCU*AAGG

Length

19 nucleotides

Bulged bases

8QOI|1|L5|U|4989, 8QOI|1|L5|C|4990

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QOI|1|L5|C|4970
8QOI|1|L5|A|4971
8QOI|1|L5|PSU|4972
8QOI|1|L5|PSU|4973
8QOI|1|L5|C|4974
8QOI|1|L5|G|4975
*
8QOI|1|L5|C|4983
8QOI|1|L5|C|4984
8QOI|1|L5|U|4985
8QOI|1|L5|G|4986
8QOI|1|L5|C|4987
8QOI|1|L5|U|4988
8QOI|1|L5|U|4989
8QOI|1|L5|C|4990
8QOI|1|L5|U|4991
*
8QOI|1|L5|A|5060
8QOI|1|L5|A|5061
8QOI|1|L5|G|5062
8QOI|1|L5|G|5063

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LP

60S ribosomal protein L17

Chain Ld

60S ribosomal protein L31