J3_8QOI_015

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

UGGA*UAC*GAA*A

Length

11 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QOI|1|S2|U|1225
8QOI|1|S2|G|1226
8QOI|1|S2|G|1227
8QOI|1|S2|A|1228
*
8QOI|1|S2|U|1530
8QOI|1|S2|A|1531
8QOI|1|S2|C|1532
*
8QOI|1|S2|G|1638
8QOI|1|S2|A|1640
8QOI|1|S2|A|1641
*
8QOI|1|S2|A|1641

Current chains

Chain S2

18S rRNA (1740-MER)

Nearby chains

Chain SF

40S ribosomal protein S5

Chain SQ

40S ribosomal protein S16

Chain SS

40S ribosomal protein S18

Chain ST

Small ribosomal subunit protein eS19