J3_8QOI_017
3D structure
- PDB id
- 8QOI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.9 Å
Loop
- Sequence
- GC(OMC)CGGAC*GGGUG*UUAGAUGUC
- Length
- 22 nucleotides
- Bulged bases
- 8QOI|1|S2|G|1274, 8QOI|1|S2|G|1507
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8QOI|1|S2|G|1270
8QOI|1|S2|C|1271
8QOI|1|S2|OMC|1272
8QOI|1|S2|C|1273
8QOI|1|S2|G|1274
8QOI|1|S2|G|1275
8QOI|1|S2|A|1276
8QOI|1|S2|C|1277
*
8QOI|1|S2|G|1320
8QOI|1|S2|G|1321
8QOI|1|S2|G|1322
8QOI|1|S2|U|1323
8QOI|1|S2|G|1324
*
8QOI|1|S2|U|1504
8QOI|1|S2|U|1505
8QOI|1|S2|A|1506
8QOI|1|S2|G|1507
8QOI|1|S2|A|1508
8QOI|1|S2|U|1509
8QOI|1|S2|G|1510
8QOI|1|S2|U|1511
8QOI|1|S2|C|1512
Current chains
- Chain S2
- 18S rRNA (1740-MER)
Nearby chains
- Chain SK
- 40S ribosomal protein S10
- Chain SP
- 40S ribosomal protein S15
- Chain Sd
- 40S ribosomal protein S29
- Chain Sf
- Ubiquitin-40S ribosomal protein S27a
Coloring options: