J3_8QOI_026

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

CAGUC*GUGCG*CGACG

Length

15 nucleotides

Bulged bases

8QOI|1|L5|C|704, 8QOI|1|L5|A|1294, 8QOI|1|L5|C|1295

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QOI|1|L5|C|451
8QOI|1|L5|A|452
8QOI|1|L5|G|453
8QOI|1|L5|U|454
8QOI|1|L5|C|455
*
8QOI|1|L5|G|701
8QOI|1|L5|U|702
8QOI|1|L5|G|703
8QOI|1|L5|C|704
8QOI|1|L5|G|705
*
8QOI|1|L5|C|1292
8QOI|1|L5|G|1293
8QOI|1|L5|A|1294
8QOI|1|L5|C|1295
8QOI|1|L5|G|1296

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain Le

60S ribosomal protein L32

Chain Lf

60S ribosomal protein L35a