J3_8QOI_027

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

8QOI|1|L5|G|959, 8QOI|1|L5|C|962, 8QOI|1|L5|G|965, 8QOI|1|L5|C|967, 8QOI|1|L5|C|968, 8QOI|1|L5|C|969, 8QOI|1|L5|U|971, 8QOI|1|L5|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QOI|1|L5|C|712
8QOI|1|L5|C|713
*
8QOI|1|L5|G|955
8QOI|1|L5|A|956
8QOI|1|L5|G|957
8QOI|1|L5|G|958
8QOI|1|L5|G|959
8QOI|1|L5|A|960
8QOI|1|L5|G|961
8QOI|1|L5|C|962
8QOI|1|L5|G|963
8QOI|1|L5|A|964
8QOI|1|L5|G|965
8QOI|1|L5|A|966
8QOI|1|L5|C|967
8QOI|1|L5|C|968
8QOI|1|L5|C|969
8QOI|1|L5|G|970
8QOI|1|L5|U|971
8QOI|1|L5|C|972
8QOI|1|L5|G|973
8QOI|1|L5|C|974
8QOI|1|L5|C|975
8QOI|1|L5|G|976
*
8QOI|1|L5|C|1278
8QOI|1|L5|A|1279
8QOI|1|L5|C|1280
8QOI|1|L5|G|1281
8QOI|1|L5|G|1282
8QOI|1|L5|G|1283
8QOI|1|L5|G|1284

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LC

Large ribosomal subunit protein uL4

Chain LE

Large ribosomal subunit protein eL6

Chain LF

Large ribosomal subunit protein uL30

Chain Le

60S ribosomal protein L32