J3_8QPP_015

3D structure

PDB id

8QPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUG*CUAACC*GAGACAG

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8QPP_015 not in the Motif Atlas

Homologous match to J3_4WF9_007

Geometric discrepancy: 0.3491

The information below is about J3_4WF9_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07703.1

Basepair signature

cWW-cWW-tSH-F-F-F-F-F-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

8QPP|1|X|U|2120
8QPP|1|X|U|2121
8QPP|1|X|G|2122
*
8QPP|1|X|C|2225
8QPP|1|X|U|2226
8QPP|1|X|A|2227
8QPP|1|X|A|2228
8QPP|1|X|C|2229
8QPP|1|X|C|2230
*
8QPP|1|X|G|2251
8QPP|1|X|A|2252
8QPP|1|X|G|2253
8QPP|1|X|A|2254
8QPP|1|X|C|2255
8QPP|1|X|A|2256
8QPP|1|X|G|2257

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 9

50S ribosomal protein L9

Chain Z

Large ribosomal subunit protein uL2

Chain v

Large ribosomal subunit protein bL28