J3_8QPP_016
3D structure
- PDB id
- 8QPP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Bacillus subtilis MutS2-collided disome complex (stalled 70S)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CUCAG*CGCAGAG*CACAAG
- Length
- 18 nucleotides
- Bulged bases
- 8QPP|1|X|C|2363
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8QPP_016 not in the Motif Atlas
- Homologous match to J3_5J7L_071
- Geometric discrepancy: 0.4322
- The information below is about J3_5J7L_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44961.1
- Basepair signature
- cWW-tSH-F-cWW-F-tHW-cWW-tWW-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
8QPP|1|X|C|2324
8QPP|1|X|U|2325
8QPP|1|X|C|2326
8QPP|1|X|A|2327
8QPP|1|X|G|2328
*
8QPP|1|X|C|2346
8QPP|1|X|G|2347
8QPP|1|X|C|2348
8QPP|1|X|A|2349
8QPP|1|X|G|2350
8QPP|1|X|A|2351
8QPP|1|X|G|2352
*
8QPP|1|X|C|2361
8QPP|1|X|A|2362
8QPP|1|X|C|2363
8QPP|1|X|A|2364
8QPP|1|X|A|2365
8QPP|1|X|G|2366
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain U
- Transfer RNA; tRNA
- Chain Y
- 5S ribosomal RNA; 5S rRNA
- Chain c
- Large ribosomal subunit protein uL5
- Chain l
- 50S ribosomal protein L18
- Chain u
- Large ribosomal subunit protein bL27
Coloring options: