J3_8QPP_036
3D structure
- PDB id
- 8QPP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Bacillus subtilis MutS2-collided disome complex (stalled 70S)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GCC*GCUUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 8QPP|1|X|A|2417, 8QPP|1|X|U|2419, 8QPP|1|X|A|2455
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8QPP_036 not in the Motif Atlas
- Homologous match to J3_5J7L_070
- Geometric discrepancy: 0.1248
- The information below is about J3_5J7L_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8QPP|1|X|G|2311
8QPP|1|X|C|2312
8QPP|1|X|C|2313
*
8QPP|1|X|G|2413
8QPP|1|X|C|2414
8QPP|1|X|U|2415
8QPP|1|X|U|2416
8QPP|1|X|A|2417
8QPP|1|X|G|2418
8QPP|1|X|U|2419
8QPP|1|X|G|2420
8QPP|1|X|A|2421
8QPP|1|X|U|2422
8QPP|1|X|C|2423
8QPP|1|X|C|2424
*
8QPP|1|X|G|2450
8QPP|1|X|C|2451
8QPP|1|X|U|2452
8QPP|1|X|C|2453
8QPP|1|X|A|2454
8QPP|1|X|A|2455
8QPP|1|X|C|2456
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain 1
- Large ribosomal subunit protein bL33
- Chain 3
- Large ribosomal subunit protein bL35
- Chain i
- 50S ribosomal protein L15
- Chain u
- Large ribosomal subunit protein bL27
Coloring options: