J3_8QRM_005

3D structure

PDB id

8QRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

UGUAAUC*GAUCAACCUCAC*GCAA

Length

23 nucleotides

Bulged bases

8QRM|1|A|U|1229, 8QRM|1|A|C|1230, 8QRM|1|A|A|1232

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QRM|1|A|U|1210
8QRM|1|A|G|1211
8QRM|1|A|U|1212
8QRM|1|A|A|1213
8QRM|1|A|A|1214
8QRM|1|A|U|1215
8QRM|1|A|C|1216
*
8QRM|1|A|G|1227
8QRM|1|A|A|1228
8QRM|1|A|U|1229
8QRM|1|A|C|1230
8QRM|1|A|A|1231
8QRM|1|A|A|1232
8QRM|1|A|C|1233
8QRM|1|A|C|1234
8QRM|1|A|U|1235
8QRM|1|A|C|1236
8QRM|1|A|A|1237
8QRM|1|A|C|1238
*
8QRM|1|A|G|1351
8QRM|1|A|C|1352
8QRM|1|A|A|1353
8QRM|1|A|A|1354

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain H

28S ribosomal protein S10, mitochondrial

Chain K

28S ribosomal protein S14, mitochondrial