J3_8QRN_005
3D structure
- PDB id
- 8QRN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mt-SSU in GTPBP8 knock-out cells, state 4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- UGUAAUC*GAUCAACCUCAC*GCAA
- Length
- 23 nucleotides
- Bulged bases
- 8QRN|1|A|U|1229, 8QRN|1|A|C|1230, 8QRN|1|A|A|1232
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8QRN|1|A|U|1210
8QRN|1|A|G|1211
8QRN|1|A|U|1212
8QRN|1|A|A|1213
8QRN|1|A|A|1214
8QRN|1|A|U|1215
8QRN|1|A|C|1216
*
8QRN|1|A|G|1227
8QRN|1|A|A|1228
8QRN|1|A|U|1229
8QRN|1|A|C|1230
8QRN|1|A|A|1231
8QRN|1|A|A|1232
8QRN|1|A|C|1233
8QRN|1|A|C|1234
8QRN|1|A|U|1235
8QRN|1|A|C|1236
8QRN|1|A|A|1237
8QRN|1|A|C|1238
*
8QRN|1|A|G|1351
8QRN|1|A|C|1352
8QRN|1|A|A|1353
8QRN|1|A|A|1354
Current chains
- Chain A
- 12S mitochondrial rRNA
Nearby chains
- Chain H
- 28S ribosomal protein S10, mitochondrial
- Chain K
- 28S ribosomal protein S14, mitochondrial
Coloring options: