J3_8QRN_009
3D structure
- PDB id
- 8QRN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mt-SSU in GTPBP8 knock-out cells, state 4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- GAGGA*UAC*GGAUU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8QRN|1|A|G|1197
8QRN|1|A|A|1198
8QRN|1|A|G|1199
8QRN|1|A|G|1200
8QRN|1|A|A|1201
*
8QRN|1|A|U|1364
8QRN|1|A|A|1365
8QRN|1|A|C|1366
*
8QRN|1|A|G|1421
8QRN|1|A|G|1422
8QRN|1|A|A|1423
8QRN|1|A|U|1424
8QRN|1|A|U|1425
Current chains
- Chain A
- 12S mitochondrial rRNA
Nearby chains
- Chain 5
- fMet-tRNAMet
- Chain F
- 28S ribosomal protein S7, mitochondrial
- Chain G
- 28S ribosomal protein S9, mitochondrial
Coloring options: