J3_8R6C_032

3D structure

PDB id

8R6C (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with Paenilamicin B2 bound with A- and P-site tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

8R6C|1|a|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8R6C_032 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0373

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8R6C|1|a|G|297
8R6C|1|a|G|298
8R6C|1|a|A|299
8R6C|1|a|A|300
8R6C|1|a|G|301
*
8R6C|1|a|C|316
8R6C|1|a|G|317
8R6C|1|a|C|318
8R6C|1|a|G|319
8R6C|1|a|A|320
8R6C|1|a|U|321
8R6C|1|a|A|322
8R6C|1|a|C|323
8R6C|1|a|A|324
8R6C|1|a|G|325
*
8R6C|1|a|C|337
8R6C|1|a|G|338
8R6C|1|a|U|339
8R6C|1|a|A|340
8R6C|1|a|C|341

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain t

Large ribosomal subunit protein uL24