3D structure

PDB id
8R8M (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
CAAG*CUAGUAA*UGAAUACG
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8R8M_002 not in the Motif Atlas
Homologous match to J3_4LFB_002
Geometric discrepancy: 0.0681
The information below is about J3_4LFB_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_25303.4
Basepair signature
cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
Number of instances in this motif group
4

Unit IDs

8R8M|1|A|C|936
8R8M|1|A|A|937
8R8M|1|A|A|938
8R8M|1|A|G|939
*
8R8M|1|A|C|1344
8R8M|1|A|U|1345
8R8M|1|A|A|1346
8R8M|1|A|G|1347
8R8M|1|A|U|1348
8R8M|1|A|A|1349
8R8M|1|A|A|1350
*
8R8M|1|A|U|1372
8R8M|1|A|G|1373
8R8M|1|A|A|1374
8R8M|1|A|A|1375
8R8M|1|A|U|1376
8R8M|1|A|A|1377
8R8M|1|A|C|1378
8R8M|1|A|G|1379

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain G
30S ribosomal protein S7
Chain I
Small ribosomal subunit protein uS9

Coloring options:


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