J3_8R8M_006

3D structure

PDB id

8R8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAAG*UGUGC*GAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8R8M|1|A|G|1003
8R8M|1|A|A|1004
8R8M|1|A|A|1005
8R8M|1|A|G|1006
*
8R8M|1|A|U|1023
8R8M|1|A|G|1024
8R8M|1|A|U|1025
8R8M|1|A|G|1026
8R8M|1|A|C|1027
*
8R8M|1|A|G|1034
8R8M|1|A|A|1035
8R8M|1|A|A|1036
8R8M|1|A|C|1037

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain N

Small ribosomal subunit protein uS14