J3_8RCL_048

3D structure

PDB id

8RCL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Non-rotated disome interface class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CGG*CUUG*CG

Length

9 nucleotides

Bulged bases

8RCL|1|A2|U|653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RCL_048 not in the Motif Atlas

Geometric match to J3_5J7L_002

Geometric discrepancy: 0.1025

The information below is about J3_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_56052.5

Basepair signature

cWW-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8RCL|1|A2|C|586
8RCL|1|A2|G|587
8RCL|1|A2|G|588
*
8RCL|1|A2|C|651
8RCL|1|A2|U|652
8RCL|1|A2|U|653
8RCL|1|A2|G|654
*
8RCL|1|A2|C|754
8RCL|1|A2|G|755

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain H2

Small ribosomal subunit protein uS8

Chain L2

Small ribosomal subunit protein uS12

Chain O2

30S ribosomal protein S15

Chain Q2

Small ribosomal subunit protein uS17