J3_8RD8_027

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CC*GUUGAU*AAUUG

Length

13 nucleotides

Bulged bases

8RD8|1|Z2|U|2799, 8RD8|1|Z2|A|2801, 8RD8|1|Z2|U|2850, 8RD8|1|Z2|U|2851

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RD8|1|Z2|C|2780
8RD8|1|Z2|C|2781
*
8RD8|1|Z2|G|2797
8RD8|1|Z2|U|2798
8RD8|1|Z2|U|2799
8RD8|1|Z2|G|2800
8RD8|1|Z2|A|2801
8RD8|1|Z2|U|2802
*
8RD8|1|Z2|A|2848
8RD8|1|Z2|A|2849
8RD8|1|Z2|U|2850
8RD8|1|Z2|U|2851
8RD8|1|Z2|G|2852

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain Af

Large ribosomal subunit protein uL3

Chain MB

Large ribosomal subunit protein bL17

Chain aA

Large ribosomal subunit protein bL32