J3_8RDW_009
3D structure
- PDB id
- 8RDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.74 Å
Loop
- Sequence
- CAUC*GUA*UUUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 8RDW|1|Z2|A|2501, 8RDW|1|Z2|U|2502
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8RDW_009 not in the Motif Atlas
- Homologous match to J3_5J7L_046
- Geometric discrepancy: 0.0787
- The information below is about J3_5J7L_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_32601.5
- Basepair signature
- cWW-tWH-cHW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
8RDW|1|Z2|C|2500
8RDW|1|Z2|A|2501
8RDW|1|Z2|U|2502
8RDW|1|Z2|C|2503
*
8RDW|1|Z2|G|2528
8RDW|1|Z2|U|2529
8RDW|1|Z2|A|2530
*
8RDW|1|Z2|U|2544
8RDW|1|Z2|U|2545
8RDW|1|Z2|U|2546
8RDW|1|Z2|A|2547
8RDW|1|Z2|A|2548
8RDW|1|Z2|A|2549
8RDW|1|Z2|G|2550
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain Je
- Large ribosomal subunit protein uL14
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