J3_8RDW_019
3D structure
- PDB id
- 8RDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.74 Å
Loop
- Sequence
- ACCAUAG*CG*UCAU
- Length
- 13 nucleotides
- Bulged bases
- 8RDW|1|D8|U|12, 8RDW|1|D8|C|105
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8RDW_019 not in the Motif Atlas
- Homologous match to J3_7A0S_021
- Geometric discrepancy: 0.3042
- The information below is about J3_7A0S_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47324.1
- Basepair signature
- cWW-F-F-tSS-F-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
8RDW|1|D8|A|8
8RDW|1|D8|C|9
8RDW|1|D8|C|10
8RDW|1|D8|A|11
8RDW|1|D8|U|12
8RDW|1|D8|A|13
8RDW|1|D8|G|14
*
8RDW|1|D8|C|66
8RDW|1|D8|G|67
*
8RDW|1|D8|U|104
8RDW|1|D8|C|105
8RDW|1|D8|A|106
8RDW|1|D8|U|107
Current chains
- Chain D8
- 5S rRNA
Nearby chains
- Chain Nc
- Large ribosomal subunit protein uL18
- Chain VH
- Large ribosomal subunit protein bL27
Coloring options: