J3_8RDW_023
3D structure
- PDB id
- 8RDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.74 Å
Loop
- Sequence
- AC*GAUAAGC*GAUUU
- Length
- 14 nucleotides
- Bulged bases
- 8RDW|1|Z2|U|79, 8RDW|1|Z2|A|81
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8RDW_023 not in the Motif Atlas
- Homologous match to J3_5J7L_037
- Geometric discrepancy: 0.071
- The information below is about J3_5J7L_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_35667.2
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8RDW|1|Z2|A|63
8RDW|1|Z2|C|64
*
8RDW|1|Z2|G|77
8RDW|1|Z2|A|78
8RDW|1|Z2|U|79
8RDW|1|Z2|A|80
8RDW|1|Z2|A|81
8RDW|1|Z2|G|82
8RDW|1|Z2|C|83
*
8RDW|1|Z2|G|116
8RDW|1|Z2|A|117
8RDW|1|Z2|U|118
8RDW|1|Z2|U|119
8RDW|1|Z2|U|120
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain Ba
- Large ribosomal subunit protein bL34
- Chain Sn
- Large ribosomal subunit protein uL23
- Chain XE
- Large ribosomal subunit protein uL29
Coloring options: