J3_8RDW_026
3D structure
- PDB id
- 8RDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.74 Å
Loop
- Sequence
- GUA*UCUUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 8RDW|1|Z2|A|2371, 8RDW|1|Z2|U|2373, 8RDW|1|Z2|A|2409
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8RDW_026 not in the Motif Atlas
- Homologous match to J3_5J7L_070
- Geometric discrepancy: 0.082
- The information below is about J3_5J7L_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8RDW|1|Z2|G|2265
8RDW|1|Z2|U|2266
8RDW|1|Z2|A|2267
*
8RDW|1|Z2|U|2367
8RDW|1|Z2|C|2368
8RDW|1|Z2|U|2369
8RDW|1|Z2|U|2370
8RDW|1|Z2|A|2371
8RDW|1|Z2|G|2372
8RDW|1|Z2|U|2373
8RDW|1|Z2|G|2374
8RDW|1|Z2|A|2375
8RDW|1|Z2|U|2376
8RDW|1|Z2|C|2377
8RDW|1|Z2|C|2378
*
8RDW|1|Z2|G|2404
8RDW|1|Z2|C|2405
8RDW|1|Z2|U|2406
8RDW|1|Z2|C|2407
8RDW|1|Z2|A|2408
8RDW|1|Z2|A|2409
8RDW|1|Z2|C|2410
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain Kd
- Large ribosomal subunit protein uL15
- Chain VH
- Large ribosomal subunit protein bL27
- Chain bk
- Large ribosomal subunit protein bL33
- Chain dh
- Large ribosomal subunit protein bL35
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